Selection of Rhizobium spp. Isolates for Inoculation of Field
Pea (Pisum sativum)
Harran University, Science and Art Faculty, Department of Biology, Şanlıurfa, Turkey
For correspondence: cdmkucuk@yahoo.com
Rhizobium isolates from wild pea nodules were characterized on the
basis of microbiological characteristics. P4, P7, P12, P14, P16, P19, P20, P22,
P23 and P24 isolates grew at the 4.5 pH, P5, P6, P11, P12, P13, P14, P16, P17,
P19, P20 and P21 isolates grew at 4% NaCl and P7, P8, P10, P11, P12, P14, P19,
P20, P22, P23, P24 and P25 isolates grew at 40°C. Resistance to antibiotics (µg mL-1) was investigated in
a large propotion of isolates; streptomycin sulphate (80), rifampisin (40),
erythromycin (30), chloramphenicol (100), Penicillin (40). In this study, local
Rhizobium bacterial isolates were isolated from wild pea root nodules
and their efficacy was investigated. Isolates significantly increased plant dry
matter weight. The highest nitrogen fixation was achieved with P4 inoculation.
Glutamine synthetase and leghemoglobin content of the nodules were determined
in the inoculated with the highest P4 isolate. İ 2021 Friends Science
Publishers
Keywords: Glutamine
synthetase; Nitrogen fixation; Pisum sativum; Rhizobium isolate
Symbiotic nitrogen fixation
occurs between bacteria and legumes (Bourion et al. 2018). These crops
are an excellent source of protein and oils for human and animal consumption
(Huang et al. 2017). In many studies, it has been explained that
nodulation, yield and nitrogen content of the plant are increased with Rhizobium
bacteria (Mishra et al. 2009; Rodriguez et al. 2014). Rhizobium
bacterial inoculants as biofertilizers to improve soil nitrogen by
biological nitrogen fixation have proven to be economically beneficial in all
soils deficient of nitrogen (Riah et al. 2014). Appropriate isolates of Rhizobium
bacteria to enhance effective symbiosis between the rhizobial isolates and
plant on the use of amount of nitrogen fertilizer for early growth of the crops
would help to improve yield (Riah et al. 2014). Approximately 80% of the
nitrogen on land is providedby symbiotic nitrogen
fixation (Fujita et al. 2014).
Nitrogen fixing root nodule bacteria are generally
isolated from root nodules of legume plants (Peix et al. 2015; Bourion et
al. 2018). The use of field pea as a forage legume in Turkey requires the
introduction of the corresponding symbionts. This species has wide adaptation
and produces high quality forage under grazing regimes (Huang et al. 2017).
However, its use is currently limited by some problems. Biofertilizers are environmentally
friendly, less expensive and hence lead to sustainable crop production. Field
pea, being a legume crop responds to inoculation with Rhizobium inoculation
to meet the partial requirement of nitrogen (Mishra et al. 2009).
Glutamine synthetase activity has an important role in nitrogen metabolism in legume
root nodules (Gordon 1991). Leghaemoglobin, glutamine synthetase and sucrose
synthetase contents are independent of plant growth and environmental
conditions (Ceccatto et al. 1998; Dawood et al.
2019). However,
very few reports are available regarding the effect of Rhizobium inoculation
on field pea. In this study, Rhizobium bacteria were isolated from the
root nodules of wild cowpea, the characterization and symbiotic effects of
these isolates were investigated.
Experimental details and treatments
Isolation, purification and phenotypic features: Rhizobium isolates specific to pea were
isolated from wild plants collected in non-cultivated fields of semi-arid
regions of Turkey. The pink colored root nodules were selected, washed with tap
water. Root nodules were then incubated in 15 s of 95% ethyl alcohol for 4 min
in sodium hypochlorite for 35 min and then washed several times with sterile
distilled water. The root nodules were crushed with forceps and the bacteria s
olution was inoculated into the Yeast Extract Mannitol (YEM) agar, were
incubated at 28oC for 35 days (Jordan 1984). Selected cultures were purified on YEM agar (Jordan 1984), colony.
Morphology, Congo red (25 µg mL-1) absorption, acid reaction in YEMA containing bromthymol
blue (25 µg mL-1) and Gram reactions
of the isolates were made and confirmed as Rhizobium bacteria. The
isolates were transferred to the YEM broth and glycerol mixture and stored at
-80°C. Sodium chloride tolerance of bacterial isolates was determined on YEM
broth containing 0, 0.5, 1, 2, 3, 4 and 5% (w/v) NaCl (Küçük et al. 2006).
Tolerance of the isolates to different temperatures (4, 15, 20, 25, 30, 37 and
40°C) was investigated in petri dishes containing Yeast extract mannitol agar
(Küçük et al. 2006). The growth at the different pH values of the
isolates was investigated. After incubation, bacterial growth was noted (Küçük et
al. 2006). Bacterial isolates were inoculated into streptomycin sulphate
(Str, 80 µg mL-1),
rifampisin (Rif, 40 µg mL-1),
erythromycin (Ery, 30 µg mL-1),
chloramphenicol (Chl, 100 µg mL-1),
Penicillin (Pen, 40 µg mL-1)
containing Yeast extract mannitol agar (Küçük et al. 2006). Carbon (C)
sources (10%), nitrogen sources (1%) and organic acids (1%) were added to the
sterilized basal salts liquid medium by filtration (0.45 µm). The bacterial isolates were added to the medium and incubated
for 5 days (Küçük et al. 2006). For the evaluation of carbon sources,
the medium was added fructose, glucose, mannitol, sucrose, starch, dulcitol,
citrate and rhamnose. For the nitrogen sources the medium was applied with
mannitol and the following compounds were added Lasparagine, Ltrytophan,
thymine and glycine (Küçük et al. 2006).
The symbiotic effects of bacterial isolates on peas were
evaluated in potted trials containing sterile soil. Some physical and chemical
properties of soil used were analyzed according to Kacar and Katkat (2007). The
healthy pea seeds were selected. The seeds were incubated in 1% sodium hypochlorite
for 5 min, in 70% ethanol for 3 min and the surface sterilization was completed
by washing several times with sterile distillated water. The isolates were
incubated at 150 rpm, 28°C for 4 days in yeast extract mannitol broth medium.
The sterilized seeds were treated with bacterial cultures (109
colony forming units mL-1). Three seed was sown per plastic pot (20
cm diameter) and were filled with 500 g of sterilised soil.
Treatments included the 25 isolate isolated from wild pea, N application, uninoculated
control (no inoculation or nitrogen) and reference isolate Rhizobium
leguminosarum. Reference isolate was obtained from USDA. 4 kg da-1 NH4NO3
was given as
nitrogen application. Triple super phosphate (as 8 kg da-1 P2O5) has been applied to
all applications. Experiment was conducted under greenhouse conditions.
The applications were made according to the trial design of randomized plots as
three parallel. After flowering of plants, plants were harvested, nodule was
determined. The plants were dried at 65°C for 24 h, weighted and milled to
determine N by Kjeldahl method (Jordan 1984).
The nitrogen content (shoot dry weight x N concentration) in the plant and the
fixed nitrogen (plant N content in inoculated pots) were calculated (Beck et
al. 1993). Symbiotic activity (%SE) calculated with the following formula
(Beck et al. 1993).
SE (%) = (Plant N content in
inoculated pots / Plant N content in N applied) × 100
Root
nodules were homogenized with 25 mM phosphate buffer (pH 7.0) and 1 mM
CaCI2 2H2O. The content was centrifuged
for 30 min at 20 000 rpm at 4şC.The samples were then analyzed for
leghaemoglobin and glutamine synthetase (Gordon 1991). Reaction mixture for
glutamine synthetase 0.2 mL 250 mM Tris HCl, pH 7.2; 0.2 mL of 30 mM ATP,
pH 7.0; 0.2 mL 500 mM MgSO4; 0.2 mL of 300 mM glutamate (pH 7.0) and 0.25 mL of
supernatant were formed. The content was read in the spectrophotometer at 540
nm (Ceccatto et al. 1998; Dakora et al. 1991). The data were expressed in µmole of γ-glutamyl-hydroxamate min−1mg−1.
To determine the leghemoglobin content, the supernatant was extracted in the
Drabkins solution and centrifuged at 20 000 rpm for 30 min. Then the
supernatant was read on the spectrophotometer at 540 nm and the results were
given as mg leghaemoglobin mg protein-1 (Ceccatto et al. 1998;
Küçük 2011).
All varieties were analyzed by using JMP11 statistical
program. Comparisons were done using students t-test. Mean comparisons has been made using a least significant difference test (P
< 0.05).
Twenty-five
isolates from the pea roots were isolated. The isolates showed different colony
characteristics. The colony diameters vary between 0.43.3 mm, and they were
circular, either opaque. All of the isolates were catalase positive. All
retrieved isolates were Gram negative, moderately motile. The isolates varied
in tolerance of pH, NaCl sensitivity and heat Table 1: Colony size,
pH, temperature and NaCl tolerance of Rhizobium spp. Isolates
Isolate |
Colony size (mm) |
Growth at pH range |
Max. tolerance to |
Isolate |
Colony size (mm) |
Growth at pH range |
Max. tolerance to |
||
Heat (°C) |
NaCl (%) |
Heat (°C) |
NaCl (%) |
||||||
P1 |
3.2 |
5.5-10.0 |
37 |
3.5 |
P14 |
2.1 |
4.5-10.0 |
40 |
4 |
P2 |
2.1 |
5.5-10.0 |
37 |
3.5 |
P15 |
0.6 |
5.5-10.0 |
37 |
3.5 |
P3 |
2.0 |
5.5-10.0 |
37 |
2 |
P16 |
2.9 |
4.5-10.0 |
37 |
4 |
P4 |
1.9 |
4.5-10.0 |
37 |
2 |
P17 |
2.2 |
5.5-10.0 |
37 |
4 |
P5 |
3.1 |
5.5-10.0 |
37 |
4 |
P18 |
2.3 |
5.5-10.0 |
37 |
1.5 |
P6 |
1.3 |
5.5-10.0 |
37 |
4 |
P19 |
0.4 |
4.5-10.0 |
40 |
4 |
P7 |
2.4 |
4.5-10.0 |
40 |
2 |
P20 |
1.8 |
4.5-10.0 |
40 |
4 |
P8 |
3.1 |
5.5-10.0 |
40 |
3 |
P21 |
2.1 |
5.5-10.0 |
37 |
4 |
P9 |
2.8 |
5.5-10.0 |
37 |
3 |
P22 |
1.3 |
4.5-10.0 |
40 |
1.5 |
P10 |
3.1 |
5.5-10.0 |
40 |
3.5 |
P23 |
0.8 |
4.5-10.0 |
40 |
2.5 |
P11 |
1.1 |
5.5-10.0 |
40 |
4 |
P24 |
1.0 |
4.5-10.0 |
40 |
1.5 |
P12 |
0.8 |
4.5-10.0 |
40 |
4 |
P25 |
1.3 |
5.5-10.0 |
40 |
1.5 |
P13 |
3.3 |
5.5-10.0 |
37 |
4 |
|
|
|
|
|
Table 2: Antibiotic
resistance pattern of root nodule isolates
Resistance pattern |
No. of resistance isolate |
% |
Str, Rif, Ery, Chl,
Pen |
P6, P12, P14, P20, P1, P18 |
24 |
Str, Rif, Ery, Chl |
P17, P5, P7, P11, P13 |
20 |
Str, Rif, Ery, Pen |
P2, P4, P15, P10 |
16 |
Str, Rif, Chl, Pen |
P19, P21 |
8 |
Str, Rif, Ery |
P3, P7 |
8 |
Str, Rif |
P8 |
4 |
Rif, Ery, Chl,
Pen |
P1, P9 |
8 |
Rif, Chl |
P16, P24 |
8 |
Rif, Pen |
P22 |
4 |
Ery, Pen |
P23 |
4 |
Ery, Chl, Pen |
P25 |
4 |
tolerance (Table 1). All of the isolates showed growth in
media containing 0, 0.5, 1, and 1.5% NaCl (w/v). All isolates were tested for
their tolerance to antibiotics (Table 2). The soil used in the study has a clay
texture. The soil was slightly alkaline (pH 7.74) and other soil chemical
properties are as follows; soil organic matter content (1.71%), available K
(97.2 kg da-1), total N (0.18%) and EC (2.45 dS
m-1 at 25°C).
The symbiotic efficacy of local
twenty-eight isolates was confirmed by plant nodulation testing (Table 3). In
this study, inoculation with different local isolates showed differences in
some plant characteristics such as plant height, dry nodule weight, root
weight, root length biomass, total dry matter, total nitrogen and symbiotic
yield. In this study, all isolates tested provided N to the plant as indicated
by dry weight and total nitrogen content. All the isolates that used in the
study were effective on plant dry matter compared with the control pots. The
lowest values were obtained from the control treatment. However, the total dry
weight was taken from native isolated isolates (P4, P10, reference isolate and
P14, respectively). The glutamine synthetase and leghaemoglobin contents in the
nodule extracts are shown in Fig. 1. The variance analysis of the obtained data
showed that the isolates had significantly effects on
shoot dry matter, total nitrogen, total symbiotic efficiency, and efficiency
rates. In the application of nitrogen and inoculation with local bacteria,
glutamine synthetase activity was found to be higher compared to control.
Glutamine synthetase and leghaemoglobin level was found to be different among
the Rhizobium isolates with inoculated applications (Fig. 1). Symbiotic
activities of the isolates were statistically different.
The isolated bacteria were grown in YMA medium and
colony morphology was examined. All of the isolates were examined to be mobile,
gram negative and rod shaped. Different between isolates were verified using
some morphological properties (Küçük et al. 2006) and ten isolates were
high produced of mucus. Küçük et al. (2006) explained the importance of
produced mucus by bacterial isolates in plant growth and nodulation formation.
There is no salt problem in the soil from which the bacteria are isolated,
whereas the isolates were tolerated in media containing 3.5 and 4% (w/v) NaCl
(Table 1). The tolerance of local isolates to some stress conditions was
investigated. According to the results, increased NaCl concentration (5%)
adversely affected the growth of bacterial isolates. Similar observations were
reported with isolates from different legumes, including field pea (Küçük et
al. 2006; Borucki and Sujkowska 2008).
High
salt tolerance is very important property for survival under the hot and dry
conditions. None of the isolates grew in the medium containing 5% NaCl. These
results are similar to those of Cordovilla et al. (1994). Abi-Ghanem et
al. (2013) and Table 3: Total N, percent N derived from N2 fixation,
shoot dry matter and nodulation score of field pea, inoculated with different
isolates of Rhizobium spp.
Isolate |
Shoot dry matter (g plant-1) |
N % |
Total N |
N Fixed |
Nodulation score# |
P1 |
0.26g-i |
3.19a |
8.34e-k |
4.47hi |
2 |
P2 |
0.24g-i |
2.23c-f |
5.22kl |
5.22h |
2 |
P3 |
0.27f-ı |
2.38c-f |
6.51i-l |
6.51gh |
1 |
P4 |
0.58ab |
2.63a-e |
15.26ab |
15.26ab |
1 |
P5 |
0.53ab |
2.87a-c |
15.09ab |
15.09a-c |
2 |
P6 |
0.35d-f |
2.79a-d |
9.72d-h |
9.72d-g |
2 |
P7 |
0.31e-h |
2.33c-f |
7.16g-l |
7.16f-h |
1 |
P8 |
0.43cd |
2.57a-f |
10.92d-g |
10.92d-f |
1 |
P9 |
0.42cd |
2.68a-d |
11.28c-f |
11.28c-e |
1 |
P10 |
0.57ab |
2.61a-e |
14.84a-c |
14.84a-c |
3 |
P11 |
0.33ef |
1.49c-f |
5.06f-l |
7.58e-h |
3 |
P12 |
0.50b |
0.19c-f |
0.94m |
0.94 ı |
2 |
P13 |
0.29e-h |
1.53c-f |
5.00f-l |
7.50e-h |
1 |
P14 |
0.55ab |
2.24c-f |
12.36a-d |
12.36b-d |
2 |
P15 |
0.28e-h |
1.98c-f |
5.54ı-l |
5.54gh |
3 |
P16 |
0.22hı |
2.27c-f |
5.09kl |
5.09h |
1 |
P17 |
0.49bc |
2.47c-f |
12.24a-d |
12.25b-d |
2 |
P18 |
0.43cd |
2.6a-d |
11.61a-e |
11.62b-d |
1 |
P19 |
0.37de |
2.32c-f |
8.65d-ı |
8.65d-g |
3 |
P20 |
0.22hı |
2.11c-f |
4.64lm |
4.64hı |
2 |
P21 |
0.32e-g |
1.90c-f |
6.16ı-l |
6.16gh |
2 |
P22 |
0.23hı |
2.38c-f |
5.35ı-l |
5.35h |
1 |
P23 |
0.43cd |
2.71a-d |
11.58a-e |
11.58b-d |
3 |
P24 |
0.19ı |
1.18c-f |
2.60lm |
3.90ı |
2 |
P25 |
0.27g-ı |
2.53a-f |
6.75h-l |
6.75gh |
1 |
R. leguminosarum |
0.57ab |
2.86a-c |
16.34a |
16.34a |
1 |
*N |
0.59a |
3.13ab |
18.61a |
18.61a |
0 |
Control |
0.18ı |
2.11c-f |
3.86lm |
|
0 |
LSD |
0.087 |
0.686 |
3.809 |
3.885 |
|
*N: NH4NO3,
#1: very well nodulated, 2:
moderately nodulated, 3: less nodulated
on the roots. Different letters indicate means separation within columns.
Wielbo et al. (2015) found that
there was a difference in the growth of Rhizobium isolates in salt
containing environments and they reported that Rhizobium isolates were
more tolerant to salt than the host plant. Rhizobium isolates were found
to be more resistant to osmotic stress than legume plants (Cordovilla et al.
1994). It was observed in studies that show different responses to salts of
different Rhizobium species (Abi-Ghanem et al. 2013). In this
study, 42.8% of the isolates grew at the 4.5 pH, 39.2% of the isolates grew at
4% NaCl and 42.8% of the isolates grew at 40°C. These results are similar
previous reports for different Rhizobium bacteria (Singleton et al.
1982). Although the soil temperature in semi-arid areas exceeds 40°C at 5 cm
from the surface, the temperature tolerant Rhizobium bacteria have not
affected the ability of nodule formation (Wielbo et al. 2015). High
temperature resistance between Rhizobium bacteria is important in the
selection of local isolates (Wielbo et al. 2015). On the other hand,
Meghvansi et al. (2010) reported that the high temperature adversely
affected the viability of Rhizobium bacteria. The isolates isolated from
arid and warmer regions were more tolerant to temperature and drought. It was
thought that the tolerances of the isolates to the drought and temperature
could be related to the geographic origin (Mutch and Young 2004; Wielbo et al. 2015). Rhizobium spp., isolated from pea roots grown in West Africa,
was reported to grow at 40°C (Muniz et al. 2017).
In general, the Turkish isolate
were able to use several compounds as sole carbon sources, as reported for
other Rhizobium bacteria (Riah et al. 2014). 25% of the isolates
showed multiple resistances to five different antibiotics. The multiple
antibiotic resistances was associated with plasmids
and this was more common in Gram-negative bacteria (Küçük et al. 2006).
This result is consistent with literature showing that Rhizobium bacteria
are resistant to high concentration of antibiotics (Küçük et al. 2006).
The antibiotic resistance of bacteria in genetic studies is extremely important
(Riah et al. 2014). There are three knows determinants of bacterial
permeability to an antibiotics; hydrophobicity,
electrical charge and size of the antibiotics (Abaidoo et al. 2002). Phenotypic
characterization based on intrinsic antibiotic resistance has been used both
with a view to isolate identification and taxonomic classification (Riah et
al. 2014). There are also no reports of Rhizobium isolates being
isolated from field pea nodules in Turkey. Moreover, other studies with native
isolates and pea have shown that significantly increased nodulation and
symbiotic efficiently (Erman et al. 2009; Mishra et al. 2009).
The interaction between bacteria and host plant is particularly important
(Muniz et al. 2017). The results of our study revealed that the native
isolates had significant effect on the plant total weight according to control
(noninoculation and non-fertilizer). Besides, the isolates had significant
effects on symbiotic efficiency. On the other hand, the uninoculated controls
did not form any nodules. Shoot dry weight was greater with local
Fig. 1: Glutamine
synthetase and leghaemoglobin determined in nodules
of field pea
Isolate P4 (580 mg plant-1)
than in the control treatment, while field pea plants inoculated by reference isolate R. leguminosarum
gave root dry weight of 560 mg plant-1. The shoot dry weight
increased by 222.2% with inoculation of P4 isolate and 216.7% with inoculation
of P10 isolate. It was determined that there were differences between isolates
by analysis of variance. Similar results have also been investigated in studies
(Mishra et al. 2009; Abi-Ghanem et al. 2013). The symbiotic performances of
local isolates were compared with the reference isolates in greenhouse
conditions. Inoculation with different isolates resulted in plant N
accumulation of more than 180 mg N plant.
It was determined that all
isolates increased the total nitrogen content and dry weight of the plant and
provided nitrogen to the plant. Similar evidence of increase in plant growth
with Rhizobium inoculation has been reported (Borucki and Sujkowska
2008; Rodriguez et al. 2014). These results could be attributed to the
development of efficient symbiosis of field pea with local isolates. These
results also show that effective Rhizobium local isolates are more
tolerant than standard isolate as observed by Bourion et al. (2018).
The glutamine synthetase activity
(304 µmol-glutamyl-hydroxamate h-1
per g fresh weight) was highest in isolate P4 inoculation. Similar results were
obtained by Ceccatto et al. (1998) for bean plants with inoculation. In a study on
root nodules, it was determined that NH3 was assimilated
with the help of glutamate synthetase (GS) and NADH-dependent glutamate
synthase (NADH-GOGAT) enzymes in amino acids (Gordon 1991). Cordovilla et al.
(1994) explained that GS functions as a positive inducer of nitrogenase and those
nif genes are controlled by GS. The control of enzyme
synthesis was thought to activate the transcription of operons involved in the
use of nitrogen source (Cordovilla et al. 1994). Leghaemoglobin levels
differed between inoculations. Isolate P4, P10, P1 and P14 with inoculation
showed a maximum activity (1.32, 1.28, 1.22 and 1.04 mg leghaemoglobin mg
protein-1, respectively).
In this study, leghaemoglobin, glutamine synthetase and
plant growth were associated with bacterial inoculation. This can help to
determine the effective isolate in nitrogen fixation similar results have also
been reported by various investigators (Cordovilla et al. 1994; Küçük
2011). It was determined that bacterial inoculation in peas affected
nodulation, dry matter weight, % nitrogen content and fixed nitrogen per plant
compared to the control plant. The activities of the isolates differed from
each other. However, the leghemoglobin and glutamine synthetase activities determined in root nodules of peas
inoculated with different isolates were also found to be different. Therefore,
the use of mineral nitrogen fertilizers, which are important in soil, water and
air pollution, can be reduced by the use of Rhizobium isolates effective
in plant cultivation. In conclusion, our Rhizobium isolates have an
ability to fix nitrogen. In similar environmental conditions, bacteria isolate to be inoculated with peas may
increase the protein content and yield of peas. However, it can be recommended
to the farmer. In later studies, the bacteria will be genetically identified
and the genes that play a role in the symbiotic interaction will be identified.
The author acknowledges the financial grant from
University of Harran, Şanlıurfa, Turkey
The author of this work has been involved in the entire
work, which includes research, design, analysis and final presentation of the
study.
Conflict of Interest
I declare no conflict of interest of any kind
Data Availability Declaration
All data reported in this article are available
with the author and will be produced on reasonable demand
Ethics Approval
Not applicable
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